Overview ======== ``scanpy_plus`` provides helper modules that complement Scanpy workflows: - ``scanpy_plus.pp``: preprocessing helpers (sex assignment, cell-cycle correlation, HVG helpers) - ``scanpy_plus.tl``: analysis tools (SCVI, GSEA, ranking and mapping utilities) - ``scanpy_plus.pl``: plotting helpers (UMAP views, ridge plots, split views, Plotly exports) - ``scanpy_plus.io``: AnnData persistence and notebook metadata helpers - ``scanpy_plus.data``: curated marker/reference loaders Use the navigation sidebar to move between usage guides, tutorials, and full API pages.