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scanpy_plus v1.0.0 documentation
scanpy_plus v1.0.0 documentation

User Guide

  • Overview
  • Installation
  • Usage
  • Tutorials
    • Beginner tutorial: QC and first UMAP
    • Intermediate tutorial: SCVI pipeline
    • Intermediate tutorial: plotting and data export
  • API reference
    • scanpy_plus
      • scanpy_plus package
        • scanpy_plus.data package
          • scanpy_plus.data.load module
        • scanpy_plus.io package
          • scanpy_plus.io.adata_split module
          • scanpy_plus.io.boot module
        • scanpy_plus.pl package
          • scanpy_plus.pl.histplot module
          • scanpy_plus.pl.pca_correlation module
          • scanpy_plus.pl.perma_plot module
          • scanpy_plus.pl.plotly_umap module
          • scanpy_plus.pl.ridgeplot module
          • scanpy_plus.pl.splitplot module
          • scanpy_plus.pl.splitscatter module
          • scanpy_plus.pl.umap3dPlotting module
          • scanpy_plus.pl.umap_allobs module
          • scanpy_plus.pl.umap_grid module
          • scanpy_plus.pl.umap_markers module
        • scanpy_plus.pp package
          • scanpy_plus.pp.assign_sex module
          • scanpy_plus.pp.cellbender module
          • scanpy_plus.pp.cellcycle_corr module
        • scanpy_plus.tl package
          • scanpy_plus.tl.gsea module
          • scanpy_plus.tl.map_to_dahlin module
          • scanpy_plus.tl.rankobs module
          • scanpy_plus.tl.run_scvi module
          • scanpy_plus.tl.tryumap module
        • scanpy_plus.describe module
        • scanpy_plus.get_from_raw module
        • scanpy_plus.globimport module
        • scanpy_plus.is_outlier module
        • scanpy_plus.magics module
  • Contributing
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API reference¶

This section documents public modules and utilities exposed by scanpy_plus.

Module index¶

  • scanpy_plus
    • scanpy_plus package
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