scanpy_plus

• scanpy_plus package
  • Subpackages
    • scanpy_plus.data package
      • Submodules
        • scanpy_plus.data.load module
          • load_skin()
    • scanpy_plus.io package
      • Submodules
        • scanpy_plus.io.adata_split module
          • read_adata_split()
          • write_adata_split()
        • scanpy_plus.io.boot module
          • pull()
          • push()
    • scanpy_plus.pl package
      • Submodules
        • scanpy_plus.pl.histplot module
          • histplot()
        • scanpy_plus.pl.pca_correlation module
          • pca_correlation()
        • scanpy_plus.pl.perma_plot module
          • perma_plot()
        • scanpy_plus.pl.plotly_umap module
          • plotly_umap()
        • scanpy_plus.pl.ridgeplot module
          • ridgeplot()
        • scanpy_plus.pl.splitplot module
          • splitplot()
        • scanpy_plus.pl.splitscatter module
          • splitscatter()
        • scanpy_plus.pl.umap3dPlotting module
          • umap3dPlotting()
        • scanpy_plus.pl.umap_allobs module
          • umap_allobs()
        • scanpy_plus.pl.umap_grid module
          • umap_grid()
        • scanpy_plus.pl.umap_markers module
          • umap_markers()
    • scanpy_plus.pp package
      • Submodules
        • scanpy_plus.pp.assign_sex module
          • assign_sex()
        • scanpy_plus.pp.cellbender module
          • cellbender()
        • scanpy_plus.pp.cellcycle_corr module
          • cellcycle_corr()
    • scanpy_plus.tl package
      • Submodules
        • scanpy_plus.tl.gsea module
          • Gsea
            • Gsea.get_results()
            • Gsea.getdb()
            • Gsea.run_gsea()
        • scanpy_plus.tl.map_to_dahlin module
          • Project_landscape
            • Project_landscape.calc_pca_dist()
            • Project_landscape.cluster_assignment()
            • Project_landscape.labelling()
            • Project_landscape.log()
            • Project_landscape.normalise()
            • Project_landscape.pca_project_myadata()
            • Project_landscape.plot_on_ref()
            • Project_landscape.run_pca_ref()
            • Project_landscape.scale_separately()
            • Project_landscape.scale_together()
          • map_to_dahlin()
        • scanpy_plus.tl.rankobs module
          • rankobs()
        • scanpy_plus.tl.run_scvi module
          • clean_genes()
          • download_cc()
          • run_scvi()
          • scvi_plot()
        • scanpy_plus.tl.tryumap module
          • tryumap()
  • Submodules
    • scanpy_plus.describe module
      • describe()
    • scanpy_plus.get_from_raw module
      • get_from_raw()
    • scanpy_plus.globimport module
    • scanpy_plus.is_outlier module
      • is_outlier()
    • scanpy_plus.magics module
      • adata_count
        • adata_count.cmagic()
        • adata_count.lcmagic()
        • adata_count.lmagic()
      • load_ipython_extension()