Installation

Prerequisites

• Python 3.8+

• A scientific Python environment (recommended: conda or mamba)

Install from GitHub

python -m pip install "scanpy>=1.9" plotly
python -m pip install git+https://github.com/haniffalab/scanpy_plus.git

Install for local development

From the repository root:

python -m pip install -e .

Build docs locally

python -m pip install -r docs/requirements.txt
sphinx-build -b html docs/source docs/build/html

Open docs/build/html/index.html in a browser to preview.