scanpy_plus.tl package

Submodules

• scanpy_plus.tl.gsea module
  • Gsea
    • Gsea.get_results()
    • Gsea.getdb()
    • Gsea.run_gsea()
• scanpy_plus.tl.map_to_dahlin module
  • Project_landscape
    • Project_landscape.calc_pca_dist()
    • Project_landscape.cluster_assignment()
    • Project_landscape.labelling()
    • Project_landscape.log()
    • Project_landscape.normalise()
    • Project_landscape.pca_project_myadata()
    • Project_landscape.plot_on_ref()
    • Project_landscape.run_pca_ref()
    • Project_landscape.scale_separately()
    • Project_landscape.scale_together()
  • map_to_dahlin()
• scanpy_plus.tl.rankobs module
  • rankobs()
• scanpy_plus.tl.run_scvi module
  • clean_genes()
  • download_cc()
  • run_scvi()
  • scvi_plot()
• scanpy_plus.tl.tryumap module
  • tryumap()